function p = symamdtree (S) % SYMAMDTREE Symmetric approximate minimum degree permutation (SYMAMD), % followed by a symmetric elimination tree post-ordering (SYMETREE). % P = SYMAMDTREE (S), for a symmetric positive definite matrix S, % returns the permutation vector p such that S(p,p) tends to have a % sparser Cholesky factor than S. Sometimes SYMAMD works well % for symmetric indefinite matrices too. SYMAMD tends to be faster % than SYMMMD and tends to return a better ordering. % SYMAMD uses spparms ('wh_frac') to determine how to % treat dense rows and columns. % % See also SYMAMD, COLAMD, COLAMDTREE, COLMMD, SYMMMD, SYMRCM, COLPERM. % % Authors: Stefan I. Larimore and Timothy A. Davis, University of Florida, % (davis@cise.ufl.edu); in collaboration with John Gilbert, Xerox PARC, and % Esmond Ng, Oak Ridge National Laboratory. This work was supported by the % National Science Foundation, under grants DMS-9504974 and DMS-9803599. % COLAMD and SYMAMD are available at http://www.cise.ufl.edu/~davis/colamd. % Tested under Matlab 5.2.0.3084, using Solaris 2.6. August 3, 1998. %------------------------------------------------------------------------------- % perform the symamd ordering: %------------------------------------------------------------------------------- p = symmmd (S) ; %------------------------------------------------------------------------------- % symmetric elimination tree post-ordering: %------------------------------------------------------------------------------- [ignore, q] = sparsfun ('symetree', S (p,p)) ; p = p (q) ;